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2010 Publications

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Lederman MM, Alter G, Daskalakis DC, et al. Determinants of protection among HIV‐exposed seronegative persons: an overview. J Infect Dis. 2010 Nov 1;202 Suppl 3:S333-8. Review.PMID: 20887220.
 
Fellay J, Shianna KV, Telenti A, et al. Host genetics and HIV-1: the final phase? PLoS Pathog. 2010 Oct 14;6(10):e1001033.PMID: 20976252.
 
Thompson AJ, Fellay J, Patel K, et al. Variants in the ITPA gene protect against ribavirin-induced hemolytic anemia and decrease the need for ribavirin dose reduction. Gastroenterology. 2010 Oct;139(4):1181-9. Epub 2010 Jun 12. PubMed PMID: 20547162.
 
Pelak K*, Shianna KV*, Ge D*, et al. The Characterization of Twenty Sequenced Human Genomes. PLoS Genet. 2010 Sep 9;6(9). pii: e1001111. PMID: 20838461
 
Mangia A, Thompson AJ, Santoro R, et al. An IL28B polymorphism determines treatment response of hepatitis C virus genotype 2 or 3 patients who do not achieve a rapid virologic response. Gastroenterology. 2010 Sep;139(3):821-7, 827.e1. Epub 2010 Jun 2. PubMed PMID: 20621700.
 
Sabado RL, O'Brien M, Subedi A, et al. Evidence of dysregulation of dendritic cells in primary HIV infection. Blood. 2010 Aug 6. [Epub ahead of print]
 
Tillmann HL, Thompson AJ, Patel K, et al. A Polymorphism Near IL28B Is Associated With Spontaneous Clearance of Acute Hepatitis C Virus and Jaundice. Gastroenterology. 2010 Jul 14. [Epub ahead of print] PubMed PMID: 20637200. 
 
Thompson AJ, Muir AJ, Sulkowski MS, et al. Hepatitis C trials that combine investigational agents with pegylated interferon should be stratified by interleukin-28B genotype. Hepatology. 2010 Jun 30. PubMed PMID: 20125193.
 
Lim SY, Chan T, Gelman RS, et al. Contributions of Mamu-A*01 status and TRIM5 allele expression, but not CCL3L copy number variation, to the control of SIVmac251 replication in Indian-origin rhesus monkeys. PLoS Genet. 2010 Jun 24;6(6):e1000997. PubMed PMID: 20585621; PubMed Central PMCID: PMC2891712.
 
Beall CM, Cavalleri GL, Deng L, et al. Natural selection on EPAS1 (HIF2alpha) associated with low hemoglobin concentration in Tibetan highlanders. Proc Natl Acad Sci U S A. 2010 Jun 22;107(25):11459-64. Epub 2010 Jun 7. PubMed PMID: 20534544; PubMed Central PMCID: PMC2895075.
 
Cirulli ET, Goldstein DB. Uncovering the roles of rare variants in common disease through whole-genome sequencing. Nature Reviews Genet. 2010 Jun;11(6)415-25.

Sobreira NLM, Cirulli ET, Avramopoulos D, et al. Whole genome sequencing of a single proband together with linkage analysis identifies a Mendelian disease gene. PLoS Genet. 2010 Jun 17;6(6):e1000991.
 
Kasperaviciute D, Catarino CB, Heinzen EL, et al.Common genetic variation and susceptibility to partial epilepsies: a genome-wide association study. Brain 2010 Jun 3.  
 
Cirulli ET, Singh A, Shianna KV, et al. Screening the human exome: a comparison of whole genome and whole transcriptome sequencing. Genome Biol. 2010;11(5):R57. Epub 2010 May 28. PubMed PMID: 20598109; PubMed Central PMCID: PMC2898068.
 
 
Royal CD, Novembre J, Fullerton SM, et al. Inferring genetic ancestry: opportunities, challenges, and implications. Am J Hum Genet. 2010, May 14;86(5):661-73.
 
Specht A, Telenti A, Martinez R, et al. Counteraction of HLA-C-mediated immune control of HIV-1 by Nef. J Virol. 2010, May 12. [Epub ahead of print]
 
Wang K, Dickson SP, Stolle CA, et al. Interpretation of association signals and identification of causal variants from genome-wide association studies. Am J Hum Genet. 2010, May 14;86(5):730-42. Epub 2010 Apr 29.
 
Beskow LM, Linney KN, Radtke RA, et al. Ethical challenges in genotype driven research recruitment. Genome Res. 2010 Apr 23.
 
Thompson AJ, Muir AJ, Sulkowski MS, et al. IL28B polymorphism improves viral kinetics and is the strongest pre-treatment predictor of SVR in HCV-1 patients. Gastroenterology 2010 Apr 15. [Epub ahead of print]
 
Goldstein DB, Noor MA. Genomics: Lessons in complexity from yeast. Nature 2010, Apr 15;464(7291):985-6
 
Pelak K, Goldstein DB, Walley NM, et al. Host Determinants of HIV-1 Control in African Americans. J Infect Dis 2010, Apr 15;201(8)1141-9
 
Heinzen EL, Radtke RA, Urban TJ, et al. Rare Deletions at 16p13.11 Predispose to a Diverse Spectrum of Sporadic Epilepsy Syndromes. Am J Hum Genet. 2010 Apr 14
 
 
Thompson AJ, Fellay J, McHutchison JG. How the human genome can predict response to Hepatitis C therapy. Current Hepatitis Reports 2010;9:1-8
 
Need AC, Goldstein DB. Whole genome association studies in complex diseases: where do we stand? Dialogues Clin Neurosci 2010;12(1):37-46.
 
Fellay J, Thompson AJ, Ge D, et al. ITPA gene variants protect against anaemia in patients treated for chronic hepatitis C. Nature 2010, Mar;464(7287):405-8
  
Dennis NA, Need AC, Labar KS, et al. COMT Val108/158 met genotype affects neural but not cognitive processing in healthy individuals. Cereb Cortex 2010, Mar;20(3):672-83
 
Rotger M, Dang KK, Fellay J,et al. Genome-wide mRNA expression correlates of viral control in CD4+ T-cells from HIV-1-infected individuals. PLoS Pathog 2010 Feb 26;6(2):e1000781.
 
Chaudhry AS, Urban TJ, Lamba JK, et al. CYP2C9*1B promoter polymorphisms, in linkage with CYP2C19*2, affect phenytoin autoinduction of clearance and maintenance dose. J Pharmacol Exp Ther 2010, Feb;332(2):599-611.
 
Cirulli ET, Kasperaviciute D, Attix DK, et al. Common genetic variation and performance on standardized cognitive tests. Eur J Hum Genet. 2010, Feb 3. [Epub ahead of print]
 
Dickson SP, Wang K, Krantz I, et al. Rare variants create synthetic genome-wide associations. PLoS Biol 2010, Jan 26;8(1):e1000294.
 
Gheuens S, Fellay J, Goldstein DB, Koralnik IJ. Role of human leukocyte antigen class I alleles in progressive multifocal leukoencephalopathy. J Neurovirol 2010, Jan 28. [Epub ahead of print]
 
Urban TJ. Race, ethnicity, ancestry and pharmacogenetics. Mt Sinai J Med 2010, 77(2):133-139.
 
Idaghdour Y, Czika W, Shianna KV, et al. Geographical genomics of human leukocyte gene expression variation in southern Morocco. Nat Genet 2010, Jan;42(1):62-7.
 
Yoon W, Ma BJ, Fellay J,et al. A polymorphism in the HCP5 gene associated with HLA-B*5701 does not restrict HIV-1 in vitro.AIDS 2010, Jan 2;24(1):155-7.

 

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