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2011 Publications

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Lingappa JR, Petrovski s, Kahle E, et.al. Genomewide Association Study for Determinants of HIV-1 Acquisition and Viral Set Point in HIV-1 Serodiscordant Couples with Quantified Virus Exposure. PLoS One. 2011 Dec 12.

Naggie S, Rallon NI, Benito JM, et.al. Variants in the ITPA Gene Protect Against Ribavirin-Induced Hemolytic Anemia in HIV/HCV-Coinfected Patients With All HCV Genotypes. J Infect Dis. 2011 Dec 9. PMID: 22158703

Cirulli ET, Urban TJ, Marino SE, et al. Genetic and environmental correlates of topiramate-induced cognitive impairment. Epilepsia. 2011 Nov 16. PMID: 22091778

Pelak K, Need AC, Fellay J, et.al. Copy Number Variation of KIR Genes Influences HIV-1 Control. PLoS Biol. 2011 Nov 9. PMID: 22140359

Howell CD, Gorden, Ryan KA, et.al. Single Nucleotide Polymorphism Upstream of Interleukin 28B Associated with Phase 1 and Phase 2 of Early Viral Kinetics in Patients Infected with HCV Genotype 1. J Hepatol. 2011 Oct 22. PMID:22027585

Torjussen TM, Lødrup Carlsen KC, Munthe-Kaas MC, et.al.Alpha-nicotinic acetylcholine receptor and tobacco smoke exposure: Effects on bronchial hyperresponsiveness in children. Pediatr Allergy Immunol. 2011 Oct 21. PMID:22017462

Scott J, Holte S, Urban T, et.al.IL28B genotype effects during early treatment with peginterferon and ribavirin in difficult-to-treat hepatitis C virus infection. J Infect Dis. 2011 Aug 1;204(3):419-25. PMID:21742841

Biesecker LG, Shianna KV, Mullikin JC. Exome sequencing: the expert view. Genome Biol. 2011 Sep 14;12(9):128. PMID:21920051

Todd JL, Goldstein DB, Ge D, et al. The State of Genome-Wide Association Studies in Pulmonary Disease: A New Perspective.  Am J Respir Crit Care Med. 2011 Jul 28. PMID:21799071

Cirulli ET, Heinzen EL, Dietrich FS, et al. A whole-genome analysis of premature termination codons. Genomics. 2011 Jul 22. PMID:21803148

Cirulli ET, Attix DK, Smith PJ, et al. Contribution of pastimes and testing strategies to the performance of healthy volunteers on cognitive tests. Clin Neuropsychol. 2011 Jul;25(5):778-98. Epub 2011 Jul 4. PMID:21722049

Catarino CB, Kasperavičiūtė D, Thom M, et al. Genomic microdeletions associated with epilepsy: Not a contraindication to resective surgery. Epilepsia. 2011 Jun 2. doi: 10.1111/j.1528-1167.2011.03087.x. PubMed PMID:21635232

Evangelou E, Fellay J, Colombo S, et al. Impact of Phenotype Definition on Genome-Wide Association Signals: Empirical Evaluation in Human Immunodeficiency Virus Type 1 Infection Am J Epidemiol. 2011 Jun 1;173(11):1336-42. Epub 2011 Apr 13.  PubMed PMID:21490045

Ge D, Ruzzo EK, Shianna KV, et al. SVA: Software for Annotating and Visualizing Sequenced Human Genomes. Bioinformatics. 2011 May 29 PubMed PMID:21624899

Thompson AJ, Clark PJ, Singh A, et al. Genome-wide association study of interferon-related cytopenia in chronic hepatitis C patients J Hepatol. 2011 May 20. [Epub ahead of print]

PMID:21703177Rallón NI, Soriano V, Naggie S, et al.  IL28B gene polymorphisms and viral kinetics in HIV/hepatitis C virus-coinfected patients treated with pegylated interferon and ribavirin. AIDS. 2011 May 15;25(8):1025-33. PMID:21505315

Kulkarni S, Savan R, Qi Y, et al. Differential microRNA regulation of HLA-C expression and its association with HIV control. Nature 2011 Apr 28;472(7344):495-8. Epub 2011 Apr 17. PMID:21499264

Lucena MI, Molokhia M, Shen Y, et al. Susceptibility to Amoxicillin-Clavulanate-Induced Liver Injury Is Influenced by Multiple HLA Class I and II Alleles. Gastroenterology. 2011 Apr 12. PubMed PMID:21570397

Zhu Q, Ge D, Maia JM, et al. A genome-wide comparison of the functional properties of rare and common genetic variants in humans. Am J Hum Genet. 2011 Apr 8;88(4):458-68. Epub 2011 Mar 31. PubMed PMID:21457907

McCormack M, Alfirevic A, Bourgeois S, et al. HLA-A*3101 and carbamazepine-induced hypersensitivity reactions in Europeans. New Engl J Med. 2011 Mar 24; 364 (12):1134-43. PubMed PMID:21428769

Fellay J, Frahm N, Shianna KV, et al. Host Genetic Determinants of T Cell Responses to the MRKAd5 HIV-1 gag/pol/nef Vaccine in the Step Trial. J Infect Dis. 2011 Mar; 203 (6) :773-779. PubMed PMID:21278214.  

Petrovski S, Fellay J, Shianna KV, et al. Common human genetic variants and HIV-1 susceptibility: a genome-wide survey in a homogeneous African population. AIDS. 2011 Feb 20; 25 (4) :513-8. PubMed PMID:21160409. 
 
Thompson AJ, Santoro R, Piazzolla V, et al. Inosine triphosphatase genetic variants are protective against anemia during antiviral therapy for HCV2/3 but do not decrease dose reductions of RBV or increase SVR. Hepatology. 2011 Feb; 53 (2) :389-95. PubMed PMID:21274861.
 
Goldstein DB. The Importance of Synthetic Associations Will Only Be Resolved Empirically. PLoS Biol. 2011 Jan 18;9(1):e1001008. PubMed PMID: 21267066. 
  
Afdhal NH, McHutchison JG, Zeuzem S, et al. Hepatitis C pharmacogenetics: state of the art in 2010. Hepatology. 2011 Jan; 53 (1) :336-45. PubMed PMID:21254181. 
 
Charlton MR, Thompson A, Veldt BJ, et al. Interleukin-28B polymorphisms are associated with histological recurrence and treatment response following liver transplantation in patients with hepatitis C virus infection. Hepatology. 2011 Jan;53(1):317-24. doi: 10.1002/hep.24074 PMID:21254179
 
Darling JM, Aerssens J, Fanning G, et al. Quantitation of pretreatment serum interferon-γ-inducible protein-10 improves the predictive value of an IL28B gene polymorphism for hepatitis C treatment response. Hepatology. 2011 Jan; 53 (1) :14-22. PubMed PMID:21254158. 
 
Hitomi Y, Cirulli ET, Fellay J, et al. Inosine triphosphate protects against ribavirin-induced ATP loss by restoring adenylosuccinate synthase function. Gastroenterology. 2011 Jan 1; PubMed PMID:21199653.
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